Pepteon Academy ships 28 clinical protocols — operational reference documents covering selection criteria, titration schedules, adverse-event management, lab monitoring, and patient counseling for every compound and adjunct stack discussed in the lessons. Protocols are organized below by module and category. Each protocol is a stand-alone reference; the Module-master Index documents show how protocols compose into multi-compound regimens.
Module 5 — Weight Loss & Metabolic Peptide Therapy
19 protocols covering GLP-1 receptor agonists, GIP/GLP-1/glucagon dual and triple agonists, combination products, oral GLP-1 RAs, adjunct stacks for visceral fat, lean-mass preservation, and post-weight-loss skin laxity, plus 5 Wave 4 multi-compound stack protocols (phenotype-targeted, inter-GLP-1 transitions, and pre-treatment metabolic preparation). Module 5 lessons (M5.1–M5.10) reference these protocols inline; each protocol can also be used independently as a clinical reference.
Per-Compound Operational Protocols (9)
- Semaglutide Protocol — First-line GLP-1 RA — weight loss, T2D, CV/renal/MASH outcome data
- Tirzepatide Protocol — Dual GIP/GLP-1 — highest mean weight loss in head-to-head trials
- Retatrutide Protocol — Triple agonist GLP-1/GIP/glucagon (investigational Phase 3)
- Survodutide Protocol — GLP-1/glucagon dual agonist (investigational Phase 3)
- Liraglutide Protocol — Daily GLP-1 RA — first-generation, established safety profile
- Cagrilintide Protocol — Long-acting amylin analog — appetite + satiety mechanism
- CagriSema Protocol — Cagrilintide + semaglutide combination
- IcoSema Protocol — Insulin icodec + semaglutide combination — T2D-specific
- Orforglipron Protocol — Oral non-peptide GLP-1 RA (no injection required)
Adjunct Stack Protocols (3)
- Tesamorelin + AOD-9604 — Visceral Fat Adjunct Protocol — Targeted visceral & adipose fat adjunct stack
- CJC-1295 + Ipamorelin + MOTS-c — Lean Mass Preservation Stack Protocol — Lean-mass preservation during GLP-1-driven weight loss
- GHK-Cu — Post-Weight-Loss Skin Laxity Protocol — Post-weight-loss skin laxity adjunct protocol
Module 5 Stack Protocols (5)
Phenotype-targeted multi-compound stack protocols integrating GLP-1 backbone with adjunct compounds. Built for real-world Module 5 regimens where single-compound protocols are insufficient. Released Wave 4, 2026-05-14.
- Module 5 — GLP-1 Backbone + Lean-Mass Preservation Stack Protocol — GLP-1 RA (Sema / Tirz / Reta) + CJC-1295 (without DAC) / Ipamorelin + MOTS-c integrated regimen for patients prioritizing lean-mass retention during weight loss.
- Module 5 — GLP-1 Backbone + Visceral-Fat Targeting Stack Protocol — GLP-1 backbone (Sema / Tirz / Reta / Survo) + Tesamorelin ± AOD-9604 for VAT-dominant phenotypes (high waist-to-height, MASLD, HIV-LIPO, central adiposity).
- Module 5 — Full Multi-Target Comprehensive Stack Protocol — Full comprehensive regimen combining GLP-1 backbone + lean-mass preservation + visceral-fat targeting + skin-laxity (GHK-Cu) layers for complex multi-phenotype patients.
- Module 5 — Inter-GLP-1 Transition Protocol — Operational protocol for switching between GLP-1 backbone agents (10 transition scenarios covering Sema↔Tirz↔Reta↔Liraglutide↔Survodutide, with washout windows, dose-equivalence mapping, and AE-bridge management).
- Module 5 — Pre-Treatment Metabolic Preparation Stack Protocol — Body-priming peptides BEFORE GLP-1 initiation: BPC-157, SS-31, KPV, TB-500, Selank, DSIP, NAD+ — used to optimize baseline metabolic, GI, mitochondrial, and inflammatory readiness in patients with high-risk baseline workups.
Module-Master References (2)
- Module 5 — Phenotype-Guided Decision Tree Protocol — Patient-phenotype routing logic — which compound for which patient
- Module 5 — Master Protocol Index — Navigation hub mapping all 14 protocols to lessons and phenotypes
Additional Protocols
14 additional clinical protocols spanning foundational reference protocols and other module domains (anti-aging, recovery, cognitive, sexual health, gut, immune). Module placement of legacy protocols may be refined as additional module deep-dives ship.
Foundational & Decision-Support References
- Weight Loss Protocol — Foundational weight-loss reference (legacy — predates Module 5 deep-dive set)
- Metabolic Reset Protocol — Metabolic reset reference
- Non-Responder Decision Algorithm — Decision logic when standard protocols underperform
Longevity, Anti-Aging & GH Axis
- Anti-Aging Daily Protocol — Daily anti-aging maintenance protocol
- Longevity Stack Protocol — Longevity-focused peptide stack
- GH Optimization Protocol — Growth hormone axis optimization
- Skin Rejuvenation Protocol — Skin rejuvenation protocol
Recovery, Repair & Tissue Regeneration
- Recovery Stack Protocol — General recovery & repair stack
- Wolverine Stack Protocol — Tissue regeneration / repair stack
- Post-Stroke Recovery Protocol — Post-stroke neurological recovery protocol
- Gut Healing Protocol — Gut-healing protocol
- Immune Restoration Protocol — Immune restoration protocol
Cognitive & Sexual Health
- Cognitive Enhancement Protocol — Cognitive enhancement protocol
- Sexual Health Protocol — Sexual health & function protocol
Clinical Use Only — Licensed Prescriber Education. Protocols are educational reference documents for licensed medical prescribers (MD, DO, NP, PA) and pharmacists operating within their scope of practice. Not intended for use by patients or non-licensed individuals. Regulatory status of specific compounds varies by jurisdiction; verify before clinical application.